Arbuscular mycorrhizal fungi in soil, roots and rhizosphere of Medicago truncatula: diversity and heterogeneity under semi-arid conditions
Identifieur interne : 000544 ( Main/Exploration ); précédent : 000543; suivant : 000545Arbuscular mycorrhizal fungi in soil, roots and rhizosphere of Medicago truncatula: diversity and heterogeneity under semi-arid conditions
Auteurs : Neji Mahmoudi [Tunisie] ; Cristina Cruz [Portugal] ; Mosbah Mahdhi ; Mohamed Mars [Tunisie] ; Maria F. Caeiro [Portugal]Source :
- PeerJ [ 2167-8359 ] ; 2019.
Abstract
Mycorrhizal symbioses are considered indicators of ecosystem biodiversity. However, their diversity and relevance in arid and semi-arid ecosystems are poorly understood. This study addressed this subject, the main objective being to evaluate arbuscular mycorrhizal fungi (AMF) diversity and heterogeneity in a semi-arid region. Samples of bulk and rhizosphere soil and fine roots of
Url:
DOI: 10.7717/peerj.6401
PubMed: 30842895
PubMed Central: 6398376
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Arbuscular mycorrhizal fungi in soil, roots and rhizosphere of <italic>Medicago truncatula</italic>: diversity and heterogeneity under semi-arid conditions</title><author><name sortKey="Mahmoudi, Neji" sort="Mahmoudi, Neji" uniqKey="Mahmoudi N" first="Neji" last="Mahmoudi">Neji Mahmoudi</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Faculté des Sciences de Gabès, Unité de recherche, Biodiversité et Valorisation des Bio-ressources en Zones Arides (BVBZA)</institution>,<city>Erriadh Zrig</city>,<country>Tunisie</country></nlm:aff><country xml:lang="fr">Tunisie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cruz, Cristina" sort="Cruz, Cristina" uniqKey="Cruz C" first="Cristina" last="Cruz">Cristina Cruz</name><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Faculdade de Ciências da Universidade de Lisboa, Centre for Ecology, Evolution and Environmental Changes (cE3c)</institution>,<city>Lisboa</city>,<country>Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Mahdhi, Mosbah" sort="Mahdhi, Mosbah" uniqKey="Mahdhi M" first="Mosbah" last="Mahdhi">Mosbah Mahdhi</name><affiliation><nlm:aff id="aff-3"><institution>Center for Environmental Research and Studies, Jazan University</institution>,<city>Jazan</city>,<country>Kingdom of Saudi Arabia</country></nlm:aff><wicri:noCountry code="nlm country">Kingdom of Saudi Arabia</wicri:noCountry></affiliation></author><author><name sortKey="Mars, Mohamed" sort="Mars, Mohamed" uniqKey="Mars M" first="Mohamed" last="Mars">Mohamed Mars</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Faculté des Sciences de Gabès, Unité de recherche, Biodiversité et Valorisation des Bio-ressources en Zones Arides (BVBZA)</institution>,<city>Erriadh Zrig</city>,<country>Tunisie</country></nlm:aff><country xml:lang="fr">Tunisie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Caeiro, Maria F" sort="Caeiro, Maria F" uniqKey="Caeiro M" first="Maria F." last="Caeiro">Maria F. Caeiro</name><affiliation wicri:level="1"><nlm:aff id="aff-4"><institution>Faculdade de Ciências da Universidade de Lisboa, Centro de Estudos do Ambiente e do Mar (CESAM)</institution>,<city>Lisboa</city>,<country>Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">30842895</idno><idno type="pmc">6398376</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6398376</idno><idno type="RBID">PMC:6398376</idno><idno type="doi">10.7717/peerj.6401</idno><date when="2019">2019</date><idno type="wicri:Area/Pmc/Corpus">000271</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000271</idno><idno type="wicri:Area/Pmc/Curation">000270</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000270</idno><idno type="wicri:Area/Pmc/Checkpoint">000133</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000133</idno><idno type="wicri:source">PubMed</idno><idno type="RBID">pubmed:30842895</idno><idno type="wicri:Area/PubMed/Corpus">000274</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000274</idno><idno type="wicri:Area/PubMed/Curation">000273</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000273</idno><idno type="wicri:Area/PubMed/Checkpoint">000288</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000288</idno><idno type="wicri:Area/Main/Merge">000544</idno><idno type="wicri:Area/Main/Curation">000544</idno><idno type="wicri:Area/Main/Exploration">000544</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Arbuscular mycorrhizal fungi in soil, roots and rhizosphere of <italic>Medicago truncatula</italic>: diversity and heterogeneity under semi-arid conditions</title><author><name sortKey="Mahmoudi, Neji" sort="Mahmoudi, Neji" uniqKey="Mahmoudi N" first="Neji" last="Mahmoudi">Neji Mahmoudi</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Faculté des Sciences de Gabès, Unité de recherche, Biodiversité et Valorisation des Bio-ressources en Zones Arides (BVBZA)</institution>,<city>Erriadh Zrig</city>,<country>Tunisie</country></nlm:aff><country xml:lang="fr">Tunisie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cruz, Cristina" sort="Cruz, Cristina" uniqKey="Cruz C" first="Cristina" last="Cruz">Cristina Cruz</name><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Faculdade de Ciências da Universidade de Lisboa, Centre for Ecology, Evolution and Environmental Changes (cE3c)</institution>,<city>Lisboa</city>,<country>Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Mahdhi, Mosbah" sort="Mahdhi, Mosbah" uniqKey="Mahdhi M" first="Mosbah" last="Mahdhi">Mosbah Mahdhi</name><affiliation><nlm:aff id="aff-3"><institution>Center for Environmental Research and Studies, Jazan University</institution>,<city>Jazan</city>,<country>Kingdom of Saudi Arabia</country></nlm:aff><wicri:noCountry code="nlm country">Kingdom of Saudi Arabia</wicri:noCountry></affiliation></author><author><name sortKey="Mars, Mohamed" sort="Mars, Mohamed" uniqKey="Mars M" first="Mohamed" last="Mars">Mohamed Mars</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Faculté des Sciences de Gabès, Unité de recherche, Biodiversité et Valorisation des Bio-ressources en Zones Arides (BVBZA)</institution>,<city>Erriadh Zrig</city>,<country>Tunisie</country></nlm:aff><country xml:lang="fr">Tunisie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Caeiro, Maria F" sort="Caeiro, Maria F" uniqKey="Caeiro M" first="Maria F." last="Caeiro">Maria F. Caeiro</name><affiliation wicri:level="1"><nlm:aff id="aff-4"><institution>Faculdade de Ciências da Universidade de Lisboa, Centro de Estudos do Ambiente e do Mar (CESAM)</institution>,<city>Lisboa</city>,<country>Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">PeerJ</title><idno type="eISSN">2167-8359</idno><imprint><date when="2019">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Mycorrhizal symbioses are considered indicators of ecosystem biodiversity. However, their diversity and relevance in arid and semi-arid ecosystems are poorly understood. This study addressed this subject, the main objective being to evaluate arbuscular mycorrhizal fungi (AMF) diversity and heterogeneity in a semi-arid region. Samples of bulk and rhizosphere soil and fine roots of <italic>Medicago truncatula</italic> were collected at four different sites with the same aridity index (6.1), in Bou-Hedma National Park, Tunisia, a semi-arid ecosystem. AMF taxa were assessed by 454- pyrosequencing and identified by BLAST matching of operational taxonomic units (OTUs) against the Maarj<italic>AM</italic> database, targeting AMF SSU <italic>rRNA</italic> gene diversity. Roots were the hotspots of AMF diversity (107 OTUs out of a total of 138). Of the 138 OTUs, 113 found correspondence in the Maarj<italic>AM</italic> database, with 32 AMF virtual taxa (VTX),<bold></bold>19 Site-exclusive (SE) and 13 common to at least two sites (Non-site exclusive, NSE); the remaining 25 OTUs grouped in 16 putative new AMF taxa (pNTX), each one consisting of OTUs sharing pairwise distances not higher than 3%. We found a high diversity and heterogeneity of AMF across the four sites, which showed, in a regression analysis, significant relation to six out of the eight environmental parameters evaluated: grazing activity and soil texture, electrical conductivity, organic matter, total phosphorus and total nitrogen. AMF colonization of plants also presented significant differences among the four sites, as well as spore density, microbial biomass and several enzymatic activities (dehydrogenase, β-glucosidase and phosphatase) evaluated in rhizosphere soils. The four sites clustered in two groups in a hierarchical clustering evaluation based on their AMF diversity (total numbers of OTU, VTX and pNTX) and the parameters referred above. The crucial role of abiotic factors, other than aridity index, on AMF community composition, was evidenced by the high heterogeneity found between AMF communities across sites under identical aridity conditions.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Abdallah, F" uniqKey="Abdallah F">F Abdallah</name></author><author><name sortKey="Chaieb, M" uniqKey="Chaieb M">M Chaieb</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Alguacil, Mm" uniqKey="Alguacil M">MM Alguacil</name></author><author><name sortKey="Torrecillas, E" uniqKey="Torrecillas E">E Torrecillas</name></author><author><name sortKey="Caravaca, F" uniqKey="Caravaca F">F Caravaca</name></author><author><name sortKey="Fernandez, Da" uniqKey="Fernandez D">DA Fernández</name></author><author><name sortKey="Azc N, R" uniqKey="Azc N R">R Azcón</name></author><author><name sortKey="Roldan, A" uniqKey="Roldan A">A 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Xu</name></author><author><name sortKey="Schimel, Jp" uniqKey="Schimel J">JP Schimel</name></author><author><name sortKey="Thornton, Pe" uniqKey="Thornton P">PE Thornton</name></author><author><name sortKey="Song, X" uniqKey="Song X">X Song</name></author><author><name sortKey="Yuan, F" uniqKey="Yuan F">F Yuan</name></author><author><name sortKey="Goswami, S" uniqKey="Goswami S">S Goswami</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhao, H" uniqKey="Zhao H">H Zhao</name></author><author><name sortKey="Xuanzhen, L" uniqKey="Xuanzhen L">L Xuanzhen</name></author><author><name sortKey="Zhiming, Z" uniqKey="Zhiming Z">Z Zhiming</name></author><author><name sortKey="Yong, Z" uniqKey="Yong Z">Z Yong</name></author><author><name sortKey="Jiantao, Y" uniqKey="Jiantao Y">Y Jiantao</name></author><author><name sortKey="Yiwei, Z" uniqKey="Yiwei Z">Z Yiwei</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Portugal</li><li>Tunisie</li></country></list><tree><noCountry><name sortKey="Mahdhi, Mosbah" sort="Mahdhi, Mosbah" uniqKey="Mahdhi M" first="Mosbah" last="Mahdhi">Mosbah Mahdhi</name></noCountry><country name="Tunisie"><noRegion><name sortKey="Mahmoudi, Neji" sort="Mahmoudi, Neji" uniqKey="Mahmoudi N" first="Neji" last="Mahmoudi">Neji Mahmoudi</name></noRegion><name sortKey="Mars, Mohamed" sort="Mars, Mohamed" uniqKey="Mars M" first="Mohamed" last="Mars">Mohamed Mars</name></country><country name="Portugal"><noRegion><name sortKey="Cruz, Cristina" sort="Cruz, Cristina" uniqKey="Cruz C" first="Cristina" last="Cruz">Cristina Cruz</name></noRegion><name sortKey="Caeiro, Maria F" sort="Caeiro, Maria F" uniqKey="Caeiro M" first="Maria F." last="Caeiro">Maria F. 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